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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8276388_8277730_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8276388 - 8277730
Intron Length:
1343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTCTTTAATT
Flanking Amino Acid:
RARLQARAAEQMNIQLEKMK
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
79.1
28.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
76.9
0.61
0.9
79
33.2
Minor 5ss
29.9
-2.3
2.6
34.4
41.2
Minor BPS
90.6
1.35
0.7
99.65
21.1

Associated Gene:

Gene:
CCDC34
Ensembl Gene ID:
ENSAPLG00000003124
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003166
8272873 - 8293716
20844