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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8277839_8290694_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8277839 - 8290694
Intron Length:
12856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAATAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTTTTATCT
Flanking Amino Acid:
KEWMQKKREEERRERERKQS
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.5
29.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.3
0.55
0.9
70.4
35.4
Minor 5ss
37.6
-1.4
3.2
49.9
46.6
Minor BPS
67
0.61
1.5
84.71
35.9

Associated Gene:

Gene:
CCDC34
Ensembl Gene ID:
ENSAPLG00000003124
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003166
8272873 - 8293716
20844