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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_830691_831359_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
830691 - 831359
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTGCGAATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCATTGTTAATT
Flanking Amino Acid:
MTPEFRNALYKWEFEESEED
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
56.4
0.14
1.1
51.7
42.3
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
58.9
0.36
2
75.74
41.7

Associated Gene:

Gene:
USP47
Ensembl Gene ID:
ENSAPLG00000015288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026421
801673 - 851535
49863
ENSAPLT00000015975
801673 - 851535
49863