Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_831457_833548_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

831457 - 833548

Intron Length:

2092

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAATGT

5'SS Class:

major

3'SS Sequence:

TTTGTATTTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTACAT

U12 Branch Point Sequence:

TTTACATTATTT

Flanking Amino Acid:

YSSVLSKSETGYVGLVNQAM

Intron Amino Acid Position:

186

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.57

67.5

38.4

Major BPS

82.7

0.81

0.9

89.3

26.1

Major PPT

82.5

0.73

0.8

77.3

Minor 5ss

45.1

-0.5

65.2

Minor BPS

59.5

0.38

1.9

82.12

39.2

Associated Gene:

Gene:

USP47

Ensembl Gene ID:

ENSAPLG00000015288

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015975

801673 - 851535

49863

ENSAPLT00000026421

801673 - 851535

49863