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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8326168_8337494_F

Intron Information:

Intron Rank:
132378
Intron Class:
major
Intron Phase:
Intron Coordinates:
8326168 - 8337494
Intron Length:
11327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TAATTAGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.4
40.3
Major BPS
78.6
0.71
1
78.6
31
Major PPT
84.5
0.78
0.8
81.2
36.5
Minor 5ss
31
-2.2
2.9
34.5
41
Minor BPS
48.4
-0
2.2
70.77
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021129
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045770
8319785 - 8337665
17881
ENSAPLT00000041434
8315782 - 8337665
21884
ENSAPLT00000017380
8325799 - 8337665
11867