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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_836049_851496_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
836049 - 851496
Intron Length:
15448

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
ACTGACTGAATT
Flanking Amino Acid:
SEENQLVPKEVESAAEEPRV
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
70.5
0.46
0.9
66.8
39.3
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
50.9
0.11
1.7
68.1
42.9

Associated Gene:

Gene:
USP47
Ensembl Gene ID:
ENSAPLG00000015288
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026421
801673 - 851535
49863