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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8509651_8511161_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8509651 - 8511161
Intron Length:
1511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
ATTTACTGAAAT
Flanking Amino Acid:
YQSGITSTYEYLELRFNKIV
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
78.5
0.64
0.7
72.3
32.4
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
62.4
0.47
1.7
82.41
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018869
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020117
8507044 - 8511332
4289