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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8515483_8516214_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8515483 - 8516214
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGAAAC
5'SS Class:
major
3'SS Sequence:
CTTCTGTTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTTGTTAAAT
Flanking Amino Acid:
AYEGSRLSIFEALYLNLLGL
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
68.8
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.7
0.62
0.8
76.4
32.2
Minor 5ss
35
-1.7
3
40.5
39.4
Minor BPS
58.7
0.35
2.2
80.39
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003447
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003528
8515367 - 8519651
4285