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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8516345_8516726_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8516345 - 8516726
Intron Length:
382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGATA
5'SS Class:
major
3'SS Sequence:
TCTTCTGCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GATTTCTCATGT
Flanking Amino Acid:
TAGFISAPDQLMPYFVMDIF
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
73.8
36.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.9
0.6
0.8
69.1
37
Minor 5ss
41.3
-1
3.2
56.7
47.6
Minor BPS
46.7
-0.1
2
65.83
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003447
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003528
8515367 - 8519651
4285