Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8530945_8531721_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8530945 - 8531721

Intron Length:

777

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTGAA

U12 Branch Point Sequence:

CATCTTTGAAGC

Flanking Amino Acid:

ARLAFIIVFEHLVFGIKSFI

Intron Amino Acid Position:

936

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

1.1

79.9

Major BPS

74.8

0.62

39.8

Major PPT

93.1

0.97

0.6

18.6

Minor 5ss

38.3

-1.3

2.8

50.9

45.4

Minor BPS

46.3

-0.3

1.7

53.03

38.6

Associated Gene:

Gene:

ANO3

Ensembl Gene ID:

ENSAPLG00000003833

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003989

8530762 - 8635843

105082

ENSAPLT00000037470

8530762 - 8729022

198261

ENSAPLT00000035408

8530762 - 8729022

198261

ENSAPLT00000027386

8530417 - 8729022

198606