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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8531828_8532692_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8531828 - 8532692
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTATATTTA
5'SS Class:
major
3'SS Sequence:
TTTTGTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
AGTAACTTAACA
Flanking Amino Acid:
ELGMGYSGYCRYRDYRAPPW
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
70.4
36.1
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
89.8
0.9
0.7
84.2
30.9
Minor 5ss
49.7
-0
2.6
66.4
45.1
Minor BPS
66.4
0.51
1.5
73.09
37.8

Associated Gene:

Gene:
ANO3
Ensembl Gene ID:
ENSAPLG00000003833
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035408
8530762 - 8729022
198261
ENSAPLT00000027386
8530417 - 8729022
198606
ENSAPLT00000003989
8530762 - 8635843
105082
ENSAPLT00000037470
8530762 - 8729022
198261