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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8534389_8535041_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8534389 - 8535041
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGTTACTTATCT
Flanking Amino Acid:
RPMPARATDIGIWYGILEGI
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
26.8
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.4
0.64
0.9
73.3
36.5
Minor 5ss
24.3
-3
3.1
28.7
43.6
Minor BPS
67.8
0.64
1.8
86.16
39.4

Associated Gene:

Gene:
ANO3
Ensembl Gene ID:
ENSAPLG00000003833
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003989
8530762 - 8635843
105082
ENSAPLT00000037470
8530762 - 8729022
198261
ENSAPLT00000035408
8530762 - 8729022
198261
ENSAPLT00000027386
8530417 - 8729022
198606