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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8535488_8537235_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8535488 - 8537235
Intron Length:
1748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TCGTCTAATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
CTTCGTCTAATA
Flanking Amino Acid:
MWNNFMELGYPLLQNWWSRR
Intron Amino Acid Position:
724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
72.7
39.4
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
71.9
0.49
1
66
38.8
Minor 5ss
44.7
-0.6
2.8
64.3
39.9
Minor BPS
46.7
-0.2
2
60.86
39.9

Associated Gene:

Gene:
ANO3
Ensembl Gene ID:
ENSAPLG00000003833
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035408
8530762 - 8729022
198261
ENSAPLT00000027386
8530417 - 8729022
198606
ENSAPLT00000003989
8530762 - 8635843
105082
ENSAPLT00000037470
8530762 - 8729022
198261