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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8538409_8539620_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8538409 - 8539620
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TGTTCACTGAGA
Flanking Amino Acid:
SIFYIAFFLGRFAGRPGKYN
Intron Amino Acid Position:
672

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
85.7
0.8
0.8
77.4
41.1
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
46.8
-0.2
2.2
65.54
40.4

Associated Gene:

Gene:
ANO3
Ensembl Gene ID:
ENSAPLG00000003833
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027386
8530417 - 8729022
198606
ENSAPLT00000003989
8530762 - 8635843
105082
ENSAPLT00000037470
8530762 - 8729022
198261
ENSAPLT00000035408
8530762 - 8729022
198261