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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8541761_8542637_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8541761 - 8542637
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTCCA
5'SS Class:
major
3'SS Sequence:
ATTTCTGCGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTCTCTGTACTT
Flanking Amino Acid:
NFMIIMSLNVVYEKVAYLLT
Intron Amino Acid Position:
623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.1
66.3
39
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
66.9
0.38
1
66.9
39.9
Minor 5ss
37.1
-1.5
2.9
48.7
41.1
Minor BPS
49.6
0.05
2.2
74.65
43.4

Associated Gene:

Gene:
ANO3
Ensembl Gene ID:
ENSAPLG00000003833
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003989
8530762 - 8635843
105082
ENSAPLT00000037470
8530762 - 8729022
198261
ENSAPLT00000035408
8530762 - 8729022
198261
ENSAPLT00000027386
8530417 - 8729022
198606