About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8542803_8543157_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8542803 - 8543157
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATATTT
5'SS Class:
major
3'SS Sequence:
CATTTATCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGTTCTAATT
Flanking Amino Acid:
MVSVSGIFFMISLVLTAVFA
Intron Amino Acid Position:
568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
76.2
33.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
76.2
0.59
0.8
70.7
34.7
Minor 5ss
44.1
-0.6
3.2
62.4
43.3
Minor BPS
58.7
0.35
1.7
79.49
37.4

Associated Gene:

Gene:
ANO3
Ensembl Gene ID:
ENSAPLG00000003833
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037470
8530762 - 8729022
198261
ENSAPLT00000035408
8530762 - 8729022
198261
ENSAPLT00000027386
8530417 - 8729022
198606
ENSAPLT00000003989
8530762 - 8635843
105082