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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8553026_8554445_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8553026 - 8554445
Intron Length:
1420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACACC
5'SS Class:
strong_major
3'SS Sequence:
CTTTATCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CTTTCTTTATCT
Flanking Amino Acid:
RSSNPEGTNEGKTNKGGVIF
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
72.1
37.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.1
0.61
0.8
69.7
36.3
Minor 5ss
40
-1.1
2.9
52.8
44.1
Minor BPS
73.3
0.81
1.6
87.39
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019079
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029686
8552417 - 8555484
3068