About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8563541_8571002_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8563541 - 8571002
Intron Length:
7462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTATACTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ATGTCTGTAACC
Flanking Amino Acid:
GLFTMDSSQVSKEICEANET
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
69.3
36.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
68.7
0.42
1.1
68.3
36.2
Minor 5ss
37.6
-1.4
3.2
50.9
45.7
Minor BPS
60.5
0.31
2
72.21
39.4

Associated Gene:

Gene:
ANO3
Ensembl Gene ID:
ENSAPLG00000003833
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037470
8530762 - 8729022
198261
ENSAPLT00000035408
8530762 - 8729022
198261
ENSAPLT00000027386
8530417 - 8729022
198606
ENSAPLT00000003989
8530762 - 8635843
105082