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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8605333_8615553_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8605333 - 8615553
Intron Length:
10221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
AGCCCACTATTT
Flanking Amino Acid:
SNTEYSDPFLDVGKDKDTYT
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
79.5
36.8
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
87.9
0.85
0.7
85.6
29.1
Minor 5ss
40.3
-1.1
3.3
55
49.2
Minor BPS
40.8
-0.6
2
54.82
40.6

Associated Gene:

Gene:
ANO3
Ensembl Gene ID:
ENSAPLG00000003833
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037470
8530762 - 8729022
198261
ENSAPLT00000027386
8530417 - 8729022
198606
ENSAPLT00000003989
8530762 - 8635843
105082