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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8605333_8728868_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8605333 - 8728868
Intron Length:
123536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
AGCCCACTATTT
Flanking Amino Acid:
QLHYSRSAPADVGKDKDTYT
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.4
46
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
87.9
0.85
0.7
85.6
29.1
Minor 5ss
41.6
-0.9
3.1
53.5
44.6
Minor BPS
40.8
-0.6
2
54.82
40.6

Associated Gene:

Gene:
ANO3
Ensembl Gene ID:
ENSAPLG00000003833
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035408
8530762 - 8729022
198261