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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8615626_8616126_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8615626 - 8616126
Intron Length:
501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ATTGCTTTTATT
Flanking Amino Acid:
TATVDVVSERAKVMETLENN
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
78.6
28.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
82.2
0.72
0.9
73.7
40.5
Minor 5ss
30.7
-2.2
3.3
40.8
45.7
Minor BPS
60.1
0.4
1.7
77.55
39.3

Associated Gene:

Gene:
ANO3
Ensembl Gene ID:
ENSAPLG00000003833
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037470
8530762 - 8729022
198261
ENSAPLT00000027386
8530417 - 8729022
198606
ENSAPLT00000003989
8530762 - 8635843
105082