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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8809812_8850433_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8809812 - 8850433
Intron Length:
40622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTATCTGTGACA
Flanking Amino Acid:
KVPFQVTSTKVGKTCLGNRN
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
73
0.52
1
68.7
41.2
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
59.3
0.29
2
74.73
37

Associated Gene:

Gene:
LUZP2
Ensembl Gene ID:
ENSAPLG00000004287
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004400
8808937 - 8993181
184245