About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8820142_8850433_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8820142 - 8850433
Intron Length:
30292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATGTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTATTTAATT
Flanking Amino Acid:
KVPFQVTSTKQNASAEKQNL
Intron Amino Acid Position:
255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.2
0.59
0.9
70
40.5
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
72.9
0.8
1.4
85.65
34.4

Associated Gene:

Gene:
LUZP2
Ensembl Gene ID:
ENSAPLG00000004287
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004399
8808550 - 8997421
188872