Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_8868588_8870616_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8868588 - 8870616

Intron Length:

2029

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTAAG

5'SS Class:

strong_major

3'SS Sequence:

TCCTTCCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATTAT

U12 Branch Point Sequence:

CTTTTATTATCC

Flanking Amino Acid:

NKLCGIHAEESKKIQAQLKE

Intron Amino Acid Position:

154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.4

1.09

0.7

Major BPS

84.7

0.86

74.3

40.7

Major PPT

86.6

0.82

0.7

84.4

23.5

Minor 5ss

35.1

-1.7

2.7

41.5

45.1

Minor BPS

56.4

0.18

1.9

70.83

40.6

Associated Gene:

Gene:

LUZP2

Ensembl Gene ID:

ENSAPLG00000004287

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004400

8808937 - 8993181

184245

ENSAPLT00000004399

8808550 - 8997421

188872