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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9198368_9199170_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9198368 - 9199170
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
CTGTGGTGCATT
Flanking Amino Acid:
SGSGGEGGLRWQVG*
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.8
33.2
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
92.8
0.96
0.5
93.3
15.6
Minor 5ss
45
-0.5
2.8
54.7
43.6
Minor BPS
36.7
-0.9
2.6
55.61
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017766
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025283
9195174 - 9200676
5503