About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9206050_9241515_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9206050 - 9241515
Intron Length:
35466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAAGTT
5'SS Class:
major
3'SS Sequence:
TATGTAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTTCCTTTATA
Flanking Amino Acid:
RVGEKILFIRMLHNKHVMVR
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
72.3
37.6
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
75.7
0.58
1
71.5
42.8
Minor 5ss
35.3
-1.7
3.7
47.5
48
Minor BPS
72.9
0.71
1.5
80.21
35.3

Associated Gene:

Gene:
GAS2
Ensembl Gene ID:
ENSAPLG00000001055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001097
9205831 - 9302292
96462