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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9241624_9245568_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9241624 - 9245568
Intron Length:
3945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
TTTTTAAAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
KSTGKLLDDAVKHISEDPPC
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.3
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.6
0.49
1
65.5
43.7
Minor 5ss
44.8
-0.6
2.9
68.1
42.7
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
GAS2
Ensembl Gene ID:
ENSAPLG00000001055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001097
9205831 - 9302292
96462