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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9250292_9260681_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9250292 - 9260681
Intron Length:
10390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATATAT
Flanking Amino Acid:
DTCLFESEGLVLHKQPREVC
Intron Amino Acid Position:
137

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
83.5
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
95
1.01
0.6
88.4
28.7
Minor 5ss
47.3
-0.3
2.5
60.3
44.3
Minor BPS
47.7
-0
1.9
70.55
40.2

Associated Gene:

Gene:
GAS2
Ensembl Gene ID:
ENSAPLG00000001055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001097
9205831 - 9302292
96462