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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9260824_9277304_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9260824 - 9277304
Intron Length:
16481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTAATTATCT
Flanking Amino Acid:
NSFEANKPGKTLPVRKIPCK
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
86.6
0.82
0.8
84.6
36
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
55.4
0.25
2
79.94
41.2

Associated Gene:

Gene:
GAS2
Ensembl Gene ID:
ENSAPLG00000001055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001097
9205831 - 9302292
96462