About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9277430_9285305_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9277430 - 9285305
Intron Length:
7876

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCCATTCTAACT
Flanking Amino Acid:
DLALWLTNLLGREITAETFM
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
72.4
0.5
1
69
41.9
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
48.1
-0
1.7
61.21
42.8

Associated Gene:

Gene:
GAS2
Ensembl Gene ID:
ENSAPLG00000001055
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001097
9205831 - 9302292
96462