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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9424544_9424901_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9424544 - 9424901
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTCTTCTTTACA
Flanking Amino Acid:
IIVGAMTKNKTREEWQYVFL
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.3
1.04
0.8
79.7
35.4
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
92
0.94
0.6
87.3
23.2
Minor 5ss
33
-1.9
3.2
43.9
43.9
Minor BPS
70.2
0.63
1.6
78.71
37.7

Associated Gene:

Gene:
SLC17A6
Ensembl Gene ID:
ENSAPLG00000009539
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009958
9424211 - 9455136
30926