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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9425030_9426440_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9425030 - 9426440
Intron Length:
1411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATGAA
U12 Branch Point Sequence:
ATTTGCTGACTT
Flanking Amino Acid:
AVGFSGFAISGFNVNHLDIA
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
57.7
0.19
1.3
51.7
43.9
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
35.7
-1.6
3.2
45.3
43.7
Minor BPS
49.6
0.05
2.1
75
42.1

Associated Gene:

Gene:
SLC17A6
Ensembl Gene ID:
ENSAPLG00000009539
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009958
9424211 - 9455136
30926