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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9427371_9429928_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9427371 - 9429928
Intron Length:
2558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTATTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCCTATTATT
Flanking Amino Acid:
EEVFGFEISKVGILSAVPHL
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
79.7
35.4
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
77.6
0.62
0.9
75.3
38.8
Minor 5ss
41.2
-1
2.5
50.1
46.4
Minor BPS
52.9
0.17
1.9
78.43
37.6

Associated Gene:

Gene:
SLC17A6
Ensembl Gene ID:
ENSAPLG00000009539
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009958
9424211 - 9455136
30926