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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9432934_9433036_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9432934 - 9433036
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAACT
Flanking Amino Acid:
RSRLATTSFCGSYAGAVIAM
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
85.1
0.79
0.8
79.6
32.3
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
75.5
0.88
1.4
91.64
31.3

Associated Gene:

Gene:
SLC17A6
Ensembl Gene ID:
ENSAPLG00000009539
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009958
9424211 - 9455136
30926