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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9435030_9450732_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
9435030 - 9450732
Intron Length:
15703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATTCAAG
5'SS Class:
weak_major
3'SS Sequence:
TCCACTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GCTTCCTTTACT
Flanking Amino Acid:
VRFYLLIRSAEVFGAAILLT
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.4
0.03
1.1
48
42.2
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
78.8
0.65
0.8
72.5
32
Minor 5ss
46.2
-0.4
2.5
53.3
44.8
Minor BPS
74.3
0.85
1.6
85.16
41

Associated Gene:

Gene:
SLC17A6
Ensembl Gene ID:
ENSAPLG00000009539
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009958
9424211 - 9455136
30926