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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9452105_9455050_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9452105 - 9455050
Intron Length:
2946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCGGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTGAC
U12 Branch Point Sequence:
CGGGGCTTGACT
Flanking Amino Acid:
FAGKSLGQLYRVLEKRQKPG
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
56.2
0.15
1.3
51
44.3
Major PPT
65
0.34
1.1
61.9
44.4
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
48.9
-0
2
63.2
47.3

Associated Gene:

Gene:
SLC17A6
Ensembl Gene ID:
ENSAPLG00000009539
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009958
9424211 - 9455136
30926