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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9482022_9482294_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9482022 - 9482294
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TCTGCATGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TCATTATTAACT
Flanking Amino Acid:
IWGNIQEAIVPWICNWWGRR
Intron Amino Acid Position:
688

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.3
72.7
39.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
71.7
0.49
1
65.6
40
Minor 5ss
44.7
-0.6
2.8
64.3
39.9
Minor BPS
68.8
0.67
1.6
81.66
39.6

Associated Gene:

Gene:
ANO5
Ensembl Gene ID:
ENSAPLG00000008626
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020780
9476012 - 9528431
52420
ENSAPLT00000009032
9477012 - 9528431
51420
ENSAPLT00000041391
9476012 - 9528431
52420
ENSAPLT00000036747
9476012 - 9528431
52420
ENSAPLT00000021257
9476012 - 9528431
52420