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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9482393_9482637_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9482393 - 9482637
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGTCCATTAATC
Flanking Amino Acid:
YMFNRWRNEECDPAGCLIEL
Intron Amino Acid Position:
656

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
75.3
0.57
0.9
74.3
35.2
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
66
0.48
1.6
74.33
35.7

Associated Gene:

Gene:
ANO5
Ensembl Gene ID:
ENSAPLG00000008626
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020780
9476012 - 9528431
52420
ENSAPLT00000009032
9477012 - 9528431
51420
ENSAPLT00000041391
9476012 - 9528431
52420
ENSAPLT00000036747
9476012 - 9528431
52420
ENSAPLT00000021257
9476012 - 9528431
52420