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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9485682_9486331_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9485682 - 9486331
Intron Length:
650

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
GTCCTTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAG
U12 Branch Point Sequence:
TGTGTCTGACAT
Flanking Amino Acid:
CISGTTVLFWVSLIIASMIA
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
72.2
39.5
Major BPS
59.6
0.24
1.5
57.3
41.7
Major PPT
74.3
0.55
0.8
73.1
31.8
Minor 5ss
38.1
-1.3
3
43.8
43.8
Minor BPS
46.6
-0.1
1.9
66.37
44

Associated Gene:

Gene:
ANO5
Ensembl Gene ID:
ENSAPLG00000008626
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009032
9477012 - 9528431
51420
ENSAPLT00000041391
9476012 - 9528431
52420
ENSAPLT00000036747
9476012 - 9528431
52420
ENSAPLT00000021257
9476012 - 9528431
52420
ENSAPLT00000020780
9476012 - 9528431
52420