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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9486407_9490157_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9486407 - 9490157
Intron Length:
3751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAG
5'SS Class:
major
3'SS Sequence:
TTGACTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
GCTTGCTTGACT
Flanking Amino Acid:
TQKKKNPVTQEMEPYLPLTS
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.5
38.9
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
76.4
0.6
1
73.2
41.9
Minor 5ss
36.1
-1.6
3.2
46.5
48.8
Minor BPS
65.9
0.58
1.8
79.87
42.4

Associated Gene:

Gene:
ANO5
Ensembl Gene ID:
ENSAPLG00000008626
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021257
9476012 - 9528431
52420
ENSAPLT00000020780
9476012 - 9528431
52420
ENSAPLT00000009032
9477012 - 9528431
51420
ENSAPLT00000041391
9476012 - 9528431
52420
ENSAPLT00000036747
9476012 - 9528431
52420