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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9490310_9491444_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9490310 - 9491444
Intron Length:
1135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTCCAAATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TATACTTTAACA
Flanking Amino Acid:
LFFAIFMGIWVTLFLEFWKR
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
76.7
33.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
73.9
0.54
0.9
66.7
38
Minor 5ss
30.1
-2.3
2.5
26.5
36
Minor BPS
78.3
0.88
1.1
81.52
33.2

Associated Gene:

Gene:
ANO5
Ensembl Gene ID:
ENSAPLG00000008626
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009032
9477012 - 9528431
51420
ENSAPLT00000041391
9476012 - 9528431
52420
ENSAPLT00000036747
9476012 - 9528431
52420
ENSAPLT00000021257
9476012 - 9528431
52420
ENSAPLT00000020780
9476012 - 9528431
52420