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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9493076_9493972_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9493076 - 9493972
Intron Length:
897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTGTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGTTGTATTC
Flanking Amino Acid:
FYKEQPLDLIRKYYGEKIGI
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.1
28.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.4
0.66
1
77.7
40.7
Minor 5ss
39
-1.2
3.2
55.7
48.5
Minor BPS
44.6
-0.4
2.2
60.49
40.3

Associated Gene:

Gene:
ANO5
Ensembl Gene ID:
ENSAPLG00000008626
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036747
9476012 - 9528431
52420
ENSAPLT00000021257
9476012 - 9528431
52420
ENSAPLT00000020780
9476012 - 9528431
52420
ENSAPLT00000009032
9477012 - 9528431
51420
ENSAPLT00000041391
9476012 - 9528431
52420