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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9494089_9495581_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9494089 - 9495581
Intron Length:
1493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GATTTGCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTCCTCTGATT
Flanking Amino Acid:
TYSAAYPLHDCQYWKKASDP
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
79
0.72
1
69
38.9
Major PPT
72.5
0.51
1
65
41
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
60.2
0.4
1.6
81.27
34.1

Associated Gene:

Gene:
ANO5
Ensembl Gene ID:
ENSAPLG00000008626
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009032
9477012 - 9528431
51420
ENSAPLT00000041391
9476012 - 9528431
52420
ENSAPLT00000036747
9476012 - 9528431
52420
ENSAPLT00000021257
9476012 - 9528431
52420
ENSAPLT00000020780
9476012 - 9528431
52420