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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9504805_9515807_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9504805 - 9515807
Intron Length:
11003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
GTTATTCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TGCTTACTAACT
Flanking Amino Acid:
AGSEVPSSSESGRRFNLFLK
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
72.3
0.5
1
67.5
38.9
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
52.5
0.16
2
74.4
42

Associated Gene:

Gene:
ANO5
Ensembl Gene ID:
ENSAPLG00000008626
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009032
9477012 - 9528431
51420