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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9510094_9515807_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9510094 - 9515807
Intron Length:
5714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
ATGCCACTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTTCCCGTGATG
Flanking Amino Acid:
AGSEVPSSSEQGLSSTETTL
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
61.1
0.25
1.1
55.3
39.7
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
54.4
-0
2.1
67.92
40.1

Associated Gene:

Gene:
ANO5
Ensembl Gene ID:
ENSAPLG00000008626
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020780
9476012 - 9528431
52420
ENSAPLT00000041391
9476012 - 9528431
52420
ENSAPLT00000036747
9476012 - 9528431
52420