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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9518597_9527591_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9518597 - 9527591
Intron Length:
8995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TTTCCTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TCTTACTGAAGT
Flanking Amino Acid:
TLIEMAPSADDDIAVLTKFK
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
80.6
0.69
1
82
27.2
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
56.7
0.29
2
77.85
44.1

Associated Gene:

Gene:
ANO5
Ensembl Gene ID:
ENSAPLG00000008626
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041391
9476012 - 9528431
52420
ENSAPLT00000036747
9476012 - 9528431
52420
ENSAPLT00000021257
9476012 - 9528431
52420