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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9579979_9606611_F

Intron Information:

Intron Rank:
146259
Intron Class:
major
Intron Phase:
Intron Coordinates:
9579979 - 9606611
Intron Length:
26633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTCCCTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
71.2
34.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
87
0.83
0.7
84.9
29.5
Minor 5ss
24.3
-3
3.1
29.7
43.1
Minor BPS
75.9
0.81
1.3
81.26
33

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028801
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028413
9528786 - 9607187
78402
ENSAPLT00000025723
9579093 - 9617824
38732
ENSAPLT00000021852
9528786 - 9691400
162615
ENSAPLT00000034097
9528786 - 9612818
84033