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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9659615_9680050_R

Intron Information:

Intron Rank:
139026
Intron Class:
major
Intron Phase:
Intron Coordinates:
9659615 - 9680050
Intron Length:
20436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TATATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.3
0.82
0.7
84.1
23.9
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
56.7
0.29
1.6
73.05
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022283
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034248
9659293 - 9680734
21442