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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9723618_9725158_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9723618 - 9725158
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGGGTA
5'SS Class:
major
3'SS Sequence:
TCAATTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTGTTTCAATT
Flanking Amino Acid:
TYSCQQCRCLEGEVDCWPLL
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
67.5
37.4
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
77.6
0.62
0.9
72.4
37.4
Minor 5ss
39
-1.2
3.6
51.6
47.5
Minor BPS
60.8
0.42
1.6
79.05
38

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032625
9721390 - 10004429
283040
ENSAPLT00000046758
9721390 - 10004429
283040
ENSAPLT00000031196
9721390 - 10006029
284640
ENSAPLT00000044680
9723279 - 10004429
281151
ENSAPLT00000029717
9721390 - 10004429
283040
ENSAPLT00000042078
9721327 - 10006029
284703
ENSAPLT00000008960
9721327 - 10004429
283103
ENSAPLT00000039500
9721390 - 10004429
283040
ENSAPLT00000047539
9721390 - 10004429
283040