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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_9730783_9784328_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9730783 - 9784328
Intron Length:
53546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GCATTATAAATC
Flanking Amino Acid:
SGFTGSHCEKDIDECALKTH
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
79.3
0.66
0.9
72.9
37.4
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
46
-0.3
1.8
52.33
39.2

Associated Gene:

Gene:
NELL1
Ensembl Gene ID:
ENSAPLG00000008616
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044680
9723279 - 10004429
281151